Human germ attacks already declining coral reefs

Plague, rabies, Lyme disease, bird flu and swine flu—people seem much more at risk for diseases from animals than the other way around. But it does go the other way too, and it has been discovered that such a case is responsible for a disease that has devastated coral reefs in the Caribbean.

“White pox disease” in coral is caused by a human strain of the common intestinal bacterium Serratia marcescens, which causes the hospital infection serratiosis. (Hospital infections, or nosocomial infections, happen because individuals already in poor health are exposed to pathogens by poor sanitary practices and invasive procedures such as surgery or catheterization.) [Etymological notes on scientific names are at the end of the post.]

The only coral known to be affected is Elkhorn coral (Acropora palmata), a major reef-bulding species in the Caribbean. Healthy Elkhorn coral looks like this.

Healthy Elkhorn coral (Acropora palmata).jpg

Here’s an example of Elkhorn coral infected with White pox disease.

White Pox Disease (Serratia marcescens) on Elkhorn Coral.jpg

A research team at the University of Georgia was recently awarded a $5M grant to investigate the disease in coral, which is “the first known case of such a ‘reverse zoonosis’ that involves the transmission of a human pathogen to a marine invertebrate”. Even more remarkable, in the words of James W. Porter, associate dean of the Odum School of Ecology and the team’s leader, “This bacterium has jumped from vertebrate to invertebrate, from terrestrial to marine, and from anaerobic to aerobic environments. Triple jumps like this are rare.”

In addition, according to the report in ProMED (partly drawn from this source),

The scope of the team’s research will extend beyond gaining an
understanding of the impact of white pox disease on elkhorn coral and
how to counter it. The most likely source of the pathogen for coral
reefs is under-treated human sewage, so the study will also explore
the intersection of public health practices and environmental health
outcomes.

“This investigation addresses not only environmental protection, but
also the socio-ecological determinants of coastal zone protection,”
said Porter. “This includes the cost of wastewater treatment
infrastructure. Given a reliance on tourism by most Caribbean
countries, this study addresses a disease system that is of great
economic importance and public health concern to developing nations.”

“This is science in action to save an endangered species and a threatened ecosystem,” said team leader Porter. “We are linking good public health practices to effective environmental protection.”

Elkhorn and Staghorn coral (Acroporis cervicornis) are both on the US Federal list of threatened species, and in 2008 the National Oceanic and Atmospheric Administration extended additional protection rules usually reserved for endangered species. The new rule will “prohibit the importing, exporting and taking of elkhorn and staghorn corals. Additionally, the rule prohibits any activities that result in the corals’ mortality or injury. Anchoring, grounding a vessel or dragging gear on the species is prohibited. Additionally, damaging the species’ habitat and discharging any pollutant or contaminant that harms the species violates NOAA’s new rule. The rule applies to elkhorn and staghorn coral in the Virgin Islands, Puerto Rico and Florida.” Of course the enforcement will be difficult, but it appears that it’s none too soon to reverse the decline of these reef-building species.

A recent analysis of 500 surveys of 200 reefs showed the most complex types of reef had been virtually wiped out across the entire Caribbean. What survives are mostly “flattened” reefs which provide poor habitat for fish including commercial species, and are less “effective in protecting coastal homes and villages from storm swells and tidal surges”.

Healthy reef of staghorn coral in the Caribbean, below.

Healthy Staghorn coral (Acropora cervicornis).jpg

Source.

When the branched corals are killed off, low-growing corals may take their place but don’t create the rich three-dimensional habitat that the branched ones do. Algae also may increase and blanket surfaces, preventing coral growth.

Flattened coral reef, degraded by loss of branching coral).jpg

Source. Photo by Jennifer E. Smith.

Other threats to coral reefs

Coral-building animals live symbiotically with algae. Influenced by water that is too warm or cold, the corals will “expel the algae (zooxanthellae) living in their tissues causing the coral to turn completely white. This is called coral bleaching. When a coral bleaches, it is not dead. Corals can survive a bleaching event, but they are under more stress and are subject to mortality.” Rising ocean temperatures have caused wide-spread bleaching events. Warm waters also absorb more CO2, causing the water to become more acidic and that makes it more difficult for reef-building organisms to form the calcium carbon skeletons that serve as their structural basis.

Overfishing, pollution including sewage and agricultural runoff, dredging,hurricanes, and development have all damaged coral reefs. Each new injury reduces the ability of living organisms to reproduce and to withstand further assaults.

Coral reefs are among the world’s richest ecosystems, second only to tropical rain forests in plant and animal diversity. They arfe essential to fisheries, tourism, and protecting beaches from erosion. Yet “nearly two-thirds of the Caribbean’s coral reefs are threatened by human activities. Agricultural runoff, overfishing, dredging, sewage discharge (a factor in White pox disease), and the growing pace of coastal development have already degraded important reef systems, resulting not only in a tremendous loss of biodiversity but also lost revenue from declining tourism and fishing, and increased coastal erosion.” This last statement comes from the World Resources Institute, which is active many environmental fronts and is currently sponsoring a country-by-country survey of the economic values of Caribbean coral reefs and mangroves: “Supporting the sustainable management of coral reefs and mangroves by quantifying their economic value”.

Elkhorn coral & research robot.jpg

Source. Some breakage from hurricanes can be seen. Also shown is Fetch1, an autonomous underwater vehicle for research that was developed by NASA.

More about coral reefs

Global Coral Reef Alliance
EPA, Coral Reefs and your Coastal Watershed
University of Florida, Overview with photos

Etymological notes

Serratia marcescens was discovered in 1819 by Venetian pharmacist Bartolomeo Bizio, as the cause of an episode of blood-red discoloration of polenta in the city of Padua.[7] Bizio named the organism four years later in honor of Serafino Serrati, a physicist who developed an early steamboat; the epithet marcescens (Latin for “decaying”) was chosen because of the pigment’s rapid deterioration. [Wikipedia]

Acropora palmata: Acropora from the Greek, akros (high) and poros (opening, pore); palmata handlike, from Greek palma (a palm, flat hand; palm branch).

Acropora cervicornis: Acropora as above; cervicornis from the Latin cervus (deer) and cornu (horn, antler)

The brightest beetle we’ve seen, and help identifying bugs

As long as I was on the topic of beetles, I thought I’d include this one which my husband photographed on Mt. Ashland in August during one of our wildflower walks.

Desmocerus aureipennis, male Elderberry Longhorn Beetle

The best resource I have found for identifying insects, if they are not among those illustrated in our insect field guides, is by using BugGuide.net. If you can narrow your search down, you may be able to identify it yourself by looking through the extensive pages of thumbnail photos for each group, genus, and species. That is how I figured out what this was,

Cyclosa conica CR0780.jpg

a spider named Cyclosa conica, for an earlier post—but I had to scan through dozens of pages of thumbnails to find this particular individual.

There’s another way: submit at least one good photo of the insect or arachnid in question to bugguide.net, with relevant details such as geographic location, time of year you saw it, and where (in your attic? under a log? on a rose bush?). Then a group of people who know lots more about bugs than you or I, will take a look, there will be perhaps some back and forth, and you’ll probably get a consensus. Before posting your photos you need to register an account with username and password, then after that you can log in and look at your photos and see what has been said about them.

BugGuide.net is hosted by Iowa State University Entomology, and a lot of the responders are extremely knowledgeable. Also, it is a collegial effort—they check each other’s work, in effect. But of course if the answer is really important to you: if this spider just bit you and your arm is swelling, or you have an orchard infestation of some bug, you want to talk to a real live person like a doctor or an ag extension agent. Try to get the bug into a little jar and take it with you.

This is a fun and educational site to browse through. There are pages of many-legged creatures awaiting identification (the better your photo, the better your chances, but send the photos you have), and of course a structure of pages organized by taxonomy, order/family/genus. Even better, on the left of each page is a visual key, a clickable guide composed of bugs by shape, to help you get close to the creature you are interested in.

The big red bug was not in our guides so I submitted it and got a precise ID. It is a Desmocerus aureipennis/auripennis, male. The females don’t have the bright red elytra, or wing covers. It’s one of a group called Elderberry Longhorn Beetles, and our photo showed it on that tree. I looked up other photos of this insect and yes, that’s what it is.

[Etymological note: desmocerus from the Greek desmos (banded or fettered) + keros (a horn) and aureipennis from the Latin aureus (golden) + penna (feather, wing).]

Biggest bug I was ever bitten by

One day this summer I was at the school where the food pantry is held, and a school landscape employee was spraying weeds. He called out in surprise, that there was a really big bug right on the nozzle of the herbicide applicator. I ran over to see and apparently was the only person willing to pick up this huge black beetle. I decided to take him home, since my husband is a beetle fancier, and rummaged around for some sort of container for him. Finally I found a kleenex box, emptied it, and with the help of a young girl gathered leaves and sticks to make a cozy temporary home. The little girl was scared of the beetle but her feelings toward him began to turn warm and nurturing when I invited her to help furnish his house. She hadn’t gotten up to touching him by the time we put him in and taped a piece of paper over the top, but given more time I feel sure she would have come around.

Here’s our prize, emerging from his house (all the furnishings got shaken to a corner by the car ride).

Ergates spiculatus Spined woodborer,emerges.jpg

He crawled on my arm and hand for a while and then I must have annoyed him because he bit me with his mandibles—made me jump! The bite made a 1/8 inch cut that did bleed, but alas left no scar for me to show off while admitting how I had completely deserved it. Below he’s on my husband’s arm.

Ergates spiculatus Spined woodborer - 15.jpg

And for better scale,

Ergates spiculatus Spined woodborer,4Scale.jpg

We were able to identify him as one of the longhorned woodboring beetles, the Spined Woodborer or Pine Sawyer Beetle (Ergates spiculatus). One clue to differentiating him from another similar species was the spininess of his thorax, visible in this photo. The spines are on the sides of his thorax, while the yellow arrows point to the palps which unfortunately are blurry in this picture.

Ergates spiculatus Spined woodborer Head.jpg

Here the palps are clearer.

Ergates spiculatus Spined woodborer palps.jpg

The palps are sensory organs for the beetle. Mandibles cut up food and maxilla help manipulate it. The parts of a beetle’s head are shown in this illustration.

Beetle head anatomy.jpg

After irritating this beetle so much, we stopped before getting any good photos of his underside, though we could see intriguing edges of fibrous stuff. Here’s someone else’s great picture of what the description says are “velvety” underparts. The eyes and two pairs of palps are also shown.

PaulBurnett'sPhoto.jpg

Etymological note: ergates is from the Greek, worker; spiculatus, from the Latin spiculum, a little sharp point (diminutive of spicum, a sharp point). The English word “spike” may derive from this Latin word, or may have a more indirect derivation; there is a Proto-Indo-European root *spei-, sharp point. [Proto-Indo-European is the common ancestor of all modern Indo-European languages. It dates from before writing, so it has been reconstructed from study of related words in various languages, and derivation of rules by which sounds change over time. The same method has been used to construct Proto-Germanic. In historical linguistic studies, the asterisk next to a “word” means that it is a reconstructed root.]

One site says this is the largest beetle in North America, up to 65 mm (2.6 inches) in length, but I could not confirm its status as champion big beetle. At any rate it is plenty large, and I wondered if it was one of those beetles, the larvae of which cause extensive die-off in our Pacific Northwest forests. A publication on wood-borers from Washington State University reassured me: “Keep in mind that almost all of our native species of long horned beetles feed in dying or stressed trees and do not attack healthy trees”. According to them, Ergates spiculatus feeds mostly on dead/dying/stressed Douglas firs or Ponderosa Pines.

That information has a different implication, however, at a time when climate change may be stressing northern forests with increased temperatures and long droughts, causing millions of trees to fall into that “stressed” category. British Columbia has reportedly lost about half of its pine trees to a borer no larger than a grain of rice, which spends most of its life boring beneath the bark, a process continued by its larvae which cut off the nutrient and water supply while feeding. To make matters worse, “The beetles also introduce a distinct blue stained fungus that holds back a tree’s natural defences against the attack, delivering a lethal larvae and fungus combination”.

Our trees look pretty good, though, so without hesitation we turned the big biting bug loose on one of them.

Ergates spiculatus Spined woodborer on tree.jpg

Western Tiger Swallowtail butterfly, and a very close look at butterfly wing-color

We’ve gotten a few terrific photos of butterflies this year—some posted here and here— but none of the swallowtails has cooperated by alighting within range. When I saw one that had died and fallen to the road I carefully carried it home for the chance to get a close look.

Papilio 02 Dorsal.jpg

There are at least three very similar species of swallowtail around here—the Anise, Western Tiger, and Oregon Swallowtails. Based on the red and blue markings I’m thinking this is the Western Tiger Swallowtail, Papilio rutulus.

Finer than “frog hair”—butterfly hair!

Enlarging the macro photos shows details such as hairs on the body and along the inner edges of the wings.

Papilio40 CLOSE 1.jpg

These hairs, called tactile setae, are attached to nerve cells, which relay information about the hairs’ movement to the butterfly. … Adults have tactile setae on almost all of their body parts. In both adults and larvae [caterpillars], the setae play an important role in helping the butterfly sense the relative position of many body parts (e.g., where is the second segment of the thorax in relation to the third segment). This is especially important for flight, and there are several collections of specialized setae and nerves that help the adult sense wind, gravity, and the position of head, body, wings, legs, antennae, and other body parts. In monarchs, setae on the adult’s antennae sense both touch and smell. (from monarchwatch.com).

In the photo below, a ventral view of the lower wings where they meet at their lowest point, there is also a delicate fringe visible along the edges. This could have aerodynamic as well as sensory functions.

papilio 46 CLOSE.jpg

From pointillism to nanostructures

Parts of the markings that appear as solid areas to our eye are revealed to be pointillist creations. I suspect we would need to know much more than we do about the vision of butterflies (and their predators?), in order to understand how these markings work for them.

Papilio42 CLOSE 1.jpg

The odd squareness of the smallest dots of color is not some pixellation in the photo, but an accurate representation. It shows the shape of the overlapping scales which form the surface of butterfly wings. Here are some microphotographs of wing scales at various magnifications, from Wikipedia.

ButterflyWingScales.jpg

And here are color microphotographs showing the same squared-off dots along with the underlying scale pattern.

MicrophotographButterflyWingScales.jpg

Picture source.


It’s been known for some time that the colors of butterfly wings are partly from pigments but mostly from the microstructure of the scales, scattering light to produce the colors. Blues, greens, reds and iridescence are usually structural, while blacks and browns come from pigments. (Wikipedia).

But now we know more, and the more we know the more intricate and amazing it is. Research (published this past June) has been able to identify the light-scattering shapes from the wings of several butterfly species, and they are described as “ ’mind-bendingly weird’ three-dimensional curving structures… [resembling] a network of three-bladed boomerangs”. The name for these crystalline forms is gyroids, and they were first described

in 1970 by NASA physicist Alan Schoen in his theoretical search for ultra-light, ultra-strong materials for use in space. Gyroids have what’s known as an ‘infinitely connected triply periodic minimal surface’: for a given set of boundaries, they have the smallest possible surface area. The principle can be illustrated in soap film on a wireframe (see image below). Unlike soap film, however, the planes of a gyroid’s surface never intersect. As mathematicians showed in the decades following Schoen’s discovery, gyroids also contain no straight lines, and can never be divided into symmetrical parts. (source, text and soap-bubble photo: wiredscience.com)

Gyroid-like soap bubble.jpg

Gyroid-like soap bubble. Photo from wiredscience.com

So gyroids were introduced to humans as an imagined created form, something that is a mind-boggler for non-mathematicians to envision.

gyroid_hex.jpg

The image above is a mathematician’s representation of one of the simpler types of gyroid.

Materials scientists have learned how to make synthetic gyroids for photonic devices, such as solar cells and communication systems, that manipulate the flow of light.

gyroidProcess.jpg

A self-assembled solar cell begins with one of two polymers forming a “gyroid” shape while the other fills in the space around it. The inner polymer is dissolved away to create a mold that is filled with a conductor of electrons. The outer polymer is then burned away, the conductor is coated with a photosensitive dye, and finally the surrounding space is filled with a conductor of positive “holes”. A solar reaction takes place at all the interfaces throughout the material, and the interlocking gyroid structure efficiently carries away the current. (Source for image and caption, Cornell Univ.)

And when Yale evolutionary ornithologist Richard Prum got curious about exactly how butterfly wing-scales twisted light, he found gyroids. His team had to use an advanced microscopy technique with nanoscale resolution, called synchrotron small angle X-ray scattering, in order to see them, but there they were. (See note at end for citation of article in PNAS.)

The butterfly’s gyroids are made of chitin, not exactly the flashy material I would associate with iridescent wings. It’s

the tough starchy material that forms the exterior of insects and crustaceans. Chitin is usually deposited on the outer membranes of cells. The Yale team wanted to know how a cell can sculpt itself into this extraordinary form, which resembles a network of three-bladed boomerangs. They found that, essentially, the outer membranes of the butterfly wing scale cells grow and fold into the interior of the cells. The membranes then form a double gyroid—or two, mirror-image networks shaped by the outer and inner cell membranes. Double gyroids are easier to self assemble but they are not as good at scattering light as a single gyroids. Chitin is then deposited in the outer gyroid to create a single solid crystal. The cell then dies, leaving behind the crystal nanostructures on the butterfly wing.

“Like engineers, butterflies grow their optically efficient single gyroids through a series of steps that make this complex shape easier to achieve. Photonic engineers are using gyroid shapes to try to create more efficient solar cells and, by mimicking nature, may be able to produce more efficient optical devices as well,” Prum said. (Source)

In an interview about the work, Richard Prum said “We’re still trying to wrap our brains around gyroids and what they are.” The shapes seem to have evolved separately in several lineages of butterflies.

”It’s a Swiss cheese,” he adds, “with spiraling channels of air traveling through it that intersect one another. But those channels actually travel in three different dimensions through the cheese, and what you end up with is this very complicated form left behind, and that form is a gyroid.”

And while the idea of butterflies with Swiss cheese wings is slightly strange, Prum says it’s a very useful one for scientist and engineers looking for the next leap forward in electronic technology.

For example, Prum says, take the fiber-optic cables that carry phone calls under the ocean. These cables carry signals in the form of colored light, but it’s very difficult to insulate them well enough to prevent light from leaking out. Current transoceanic cables have to have booster stations built along them to keep the signal strong. But a layer of gyroids around the fiber-optic cable “would act like a perfect insulation to that fiber,” Prum says. The same tiny structures that give the Emerald-patched Cattleheart its lovely green patches could also be used to keep green light from escaping a fiber-optic cable.

ButterflyScalesGreen.jpg

The vivid green color of the scales of this Papilionid butterfly are produced by optically efficient single gyroid photonic crystals. Caption and photo from www.physorg.com

Right now, it’s expensive and impractical to manufacture gyroids small enough to do that job. But butterflies hold the secret to growing them naturally. “If you could grow one, at exactly the right scale, as butterflies do,” says Prum, “you could make these things a lot easier.” (NPR interview, Jul 3, 2010)

This is a fine example of how curiosity can lead us to unexpected discoveries. The original question is one that could be used by certain Congressional anti-intellectuals in their periodic efforts to discredit basic research: “Imagine, all this work to find out what makes the color on butterfly wings! How ridiculous!” The research and technological developments that are thought “useful” by these folks had their origins in someone’s basic research, sparked by human curiosity. From butterfly wing-color to, perhaps, more efficient fiber-optic cables or solar energy collectors. It’s called bioengineering: investigating the functions and structures of nature, to derive principles and patterns for technological innovations. But for me it’s satisfying in itself, the revelation of these marvelous structures, underlying the evanescent beauty of a butterfly.

Papilio rutulus.jpg

Western Tiger Swallowtail butterfly on Buddleia bloom. Photo by terwilliger911, flickr.

Note: The article describing gyroids as the structure causing some colors in butterfly wings is:
Structure, function, and self-assembly of single network gyroid (I4132) photonic crystals in butterfly wing scales.
Vinodkumar Saranathan et al. Proceedings of the National Academy of Sciences. Published online before print June 14, 2010, doi: 10.1073/pnas.0909616107. The abstract is available free, but the article requires purchase or subscription to PNAS. There is a supplementary article here that contains some interesting images and very technical text. There’s even a movie you can watch showing a slice-by-slice trip through a certain sort of gyroid, or as the text says, though “the pentacontinuous volume of a level set core-shell double gyroid structure”.